Scaffold Ga0181349_1008644

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181349_1008644

Scaffold Ga0181349_1008644

Overview

Basic Information
Taxon OID	3300017778 Open in IMG/M
Scaffold ID	Ga0181349_1008644 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4259
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021525	Metagenome	218	N
F052591	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181349_10086441	F052591	N/A	AFIVTPSAVAIYESPILRMSTNVVTSGEIETMLYGYLAVGVLVAGGVRRFNLT
Ga0181349_10086448	F021525	N/A	VTVYTPYPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQVKDSTNTYRTIYTGTISDLDISLDAYGSEGSVAVYSITAVGPLAILNRFTTGGDGFAKEFDGTRVLNILSDAFLENWDEVVPTLTWSAVSSLAT

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