NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181349_1075868

Scaffold Ga0181349_1075868


Overview

Basic Information
Taxon OID3300017778 Open in IMG/M
Scaffold IDGa0181349_1075868 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014487Metagenome / Metatranscriptome262Y
F035218Metagenome / Metatranscriptome172Y
F046196Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0181349_10758681F046196N/ATAFSVRLSAGDYYEVPFNYTGLIGGIFATAGTAEVTQLS
Ga0181349_10758682F035218AGGAGMPLVKNPSNIDNFLFSTGRTRAFRAGMAGSYFKSAGVGATATGGNTIGFNLSINAGSAAAGTAKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYIGSTNSVIRIVFGGTGNSTDAPAAGANGLTIKGFGAEFALQSGVIQARLIGFDSAYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQAPLLTLTGGPTNDTSTNRFGPEIQCSNNASIAPTASPSAIFQSTFWLLDVQ
Ga0181349_10758683F014487GGAMPLLLITLLLCSCSPKPADSNVLPRYSDMGAAEDAGAVSSGNVK
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