NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181349_1167174

Scaffold Ga0181349_1167174


Overview

Basic Information
Taxon OID3300017778 Open in IMG/M
Scaffold IDGa0181349_1167174 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)780
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022400Metagenome214Y
F024719Metagenome / Metatranscriptome204Y
F034906Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0181349_11671741F024719N/ASEVINLPQRGKITIVFYEVSDPQGIAIWGGESPQEALDWYRRSPAGSKIWVSQYEADEEEARLVLDLIEITPIVLATIADSIDRWSK
Ga0181349_11671742F034906GGAGMSKLNKRLQSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKMADENMGKKWLDLDGNTKSTNGRSR
Ga0181349_11671743F022400AGGMKKTTTERVQRTTLRLVSAGVGKSGTSSSPFRPVRAGLITTQKTNKEVQLTELLNYLERKIAEANIKSLEVLNTYLN
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