NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181346_1000747

Scaffold Ga0181346_1000747


Overview

Basic Information
Taxon OID3300017780 Open in IMG/M
Scaffold IDGa0181346_1000747 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14338
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F011222Metagenome / Metatranscriptome293N
F025459Metagenome201N
F035667Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0181346_100074716F035667GAGMEELPFAAGLQLLHADDYVNGRHSAWANNSASVNVDALATIEDTLAKYGKIQIRELEV
Ga0181346_100074718F011222N/AMPLAPRQKGAAFLYMEPNKRFFHTINLKCAVALATLGFKMNKPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK
Ga0181346_100074725F008495N/ACREISGTILHVLNILIVYHLRLGDIARCLPIAKHFADQGHNVMFECLPEYHGLFAMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVIAAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF
Ga0181346_10007474F025459AGAAGMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKLDEDTMEAVRAWIWEQRSDRNIPELR
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