NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181346_1006443

Scaffold Ga0181346_1006443


Overview

Basic Information
Taxon OID3300017780 Open in IMG/M
Scaffold IDGa0181346_1006443 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5101
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027415Metagenome / Metatranscriptome194Y
F047648Metagenome149Y
F051879Metagenome / Metatranscriptome143Y
F083937Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181346_100644311F027415GAGMMDLGKLKEFVMNDNVFTVSVLLAFICLIGSVTFYQYSELKSVERNVESAIVKGIDPIAVRCAYASERDVVCVAYAASHNTQPSTKK
Ga0181346_10064432F083937AGGMGKTYHKQPKRFEDEQTSGRSGKHAKHSNGRKSGGMKTLNSYVDDDYDSFDDEVELSDEIQIQHTKNTP
Ga0181346_10064435F051879AGGMNLNEKYNSLQIEKMKLDKFFSMFLEKFERKMDSDKTDTPIWKLYKTKLKEYDKVSQELKNTEYWIKKEQNVSYI
Ga0181346_10064436F047648AGGAMSEFCVKCSDLESQMELLRKSHYEEIQCMKAKIAKLQNENEALVMDVAFYGGNLINLSCNEK
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Institute for Fundamental Biomedical Research
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