NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181346_1053925

Scaffold Ga0181346_1053925


Overview

Basic Information
Taxon OID3300017780 Open in IMG/M
Scaffold IDGa0181346_1053925 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1622
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009883Metagenome / Metatranscriptome311Y
F032155Metagenome / Metatranscriptome180Y
F038208Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0181346_10539251F038208GAGMIDRIEEVQCMIAAIQHCHDRSADHSTRIVKDISWFAYVAQMGESMAAEYVVAKHLGYDYLPGITWDKSKADVGDHIEVKWSVNPASNLWIQESDRHDRDIA
Ga0181346_10539254F009883GGAGMNEASIVIAMIIAGALWAVMAYSVGFKEGERQGYSRGRAVSRHASSRVTS
Ga0181346_10539255F032155N/AVSPGEWTAVGGLVLAILTAIYSSMRIIIKSVMSELLPNHGASMKDQISRIEARLDYLYTQLIEKK
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