Scaffold Ga0181380

Basic Information
Taxon OID	3300017782 Open in IMG/M
Scaffold ID	Ga0181380_1000181 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28375
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (52.94%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

28375

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (52.94%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010570	Metagenome / Metatranscriptome	302	Y
F013704	Metagenome / Metatranscriptome	269	Y
F024891	Metagenome / Metatranscriptome	204	Y
F053302	Metagenome / Metatranscriptome	141	Y
F055664	Metagenome / Metatranscriptome	138	N
F083262	Metagenome / Metatranscriptome	113	N
F084220	Metagenome / Metatranscriptome	112	N
F099890	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_100018110	F053302	N/A	MELGFIIEQLQKTDAIDQDTSIAKGEWKIITKWSEAKEQIRWQLRKR
Ga0181380_100018115	F084220	N/A	MGYLDWELESHQYYQDTTCGVCGECTDPDYYDCRCEDEEDDIHLGI
Ga0181380_100018116	F099890	GAG	MNLYDKLSPEAVKVLDQEMIKYPYSTTALIRGLKENRYCLDLTLNQCHRVAAVFGFECTLTNIINFFE
Ga0181380_100018123	F055664	N/A	MSKSDQILVNRKNLEMFISILTQVHLRGQLSRDEQSFLGKFVDLPPSPAQPNRSQRRLNQKMINQIIREDRKRKTNE
Ga0181380_100018133	F013704	GAG	MDFKRKMLNGQRFEINSMEFVCMETHAYLQTRTDQEESDIDVGSSYYIVRNTSTGRLHRIPFQKIIDKEKEITWKI
Ga0181380_10001814	F024891	N/A	MIIVKENTTAQIKMYLRDFTTESFEIEIISEDQRVEKVDAAISGSYDDFRKVLTFSYNVSALVAESFYVVKIWEVEKIKLLSQDKMYILPSGSSVATYQPKLAITEKTMDNEFKIYGE
Ga0181380_100018140	F083262	AGAAG	MRDPNIDRYLHKMAMLFQNLGSESTPEERIYAKEEERRYLGRIAEIDSEYAERLGYD
Ga0181380_100018150	F010570	N/A	MKTFRKYSFGSKGAATTKLNALPKDEEGNPTHSHAIVHLGNLVEKEGTYDDEGEVITEPVLSSTYHIDVLWDGEPVESWDSAMVWCAPLGVHTFGSSSAIAEWTEACKELHPEYFPEPEENLING

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181380_1000181

Overview

Ecosystem & Geography

Associated Families

Sequences