NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1007929

Scaffold Ga0181380_1007929


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1007929 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4201
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F012117Metagenome / Metatranscriptome283N
F059861Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10079291F012117N/AMVDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVDFQYLQLDPSTFKSGWGRYTKADGFEYAWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAYLWQRFTFAESSAFNSILGSFWNQMDSSSDSLPVVKYEGSKPIQVGMGNSSELTFSFAKFAPRSADFVIPSWYTDQEAPVEDTFKDPNAGLADKVQEMIDKNELSDDDIPF
Ga0181380_10079294F002221GAGMKTYLEETLEQKLKDLRVYEVDTRIKWGNRKRIFKMVGVQFEIKFCRAEQMLKDSLFSDPIKKILQMVEMMLRAYEQLNIKCEESGYIQIQPNAKCFNFDNKTALVCDTDSEKPVLEKIHKDEKDIMIFSIEELFRCIPNDFIRAKELLSKLDKSVNIKRVDYV
Ga0181380_10079296F059861N/AMSKFHQKDLPYGETGEKFVLNIVNRKHPMAYKMEGYFIEYDIMIPEIDKTVEVKRDKHTDRTGNAFIETYCNKIESGINASTADYWAYLTKTMLYWIKSNDLKICILENNIPEGKNYMIDGKIIDAYLIPIDIFKNYCMRIDTLTEEQLCQLN
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