NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1026891

Scaffold Ga0181380_1026891


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1026891 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003219Metagenome / Metatranscriptome500Y
F032828Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10268912F003219AGGMDNQTVVVPHIEDNVPLPKNAREALPDLSTQEELEARTNTIKMLADIQDENIEPSQENMEQAEVIAQEMMANPELKPDFGSYPNETIAFLAGMVAQTSHMVAKDLADIKLTVLNGLLQEAYSAKSSRERISALKAVGEIDGVDAFKRKTEVTHITKSGDELEKELLATINELKGKVIHTKEVVEVQDVEFDDD
Ga0181380_10268913F032828GAGGMRMDINKEGVLHLDLFDIETQEDEHKFIYYYLGLSYDTKKKFENAYYNLYLKGLLAEPEAQIIHTDINNITHIEVHPKDILKNISMIKRILAGDVVDKPEPEPESKPHLVVVEDENE
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