NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181348_1182794

Scaffold Ga0181348_1182794


Overview

Basic Information
Taxon OID3300017784 Open in IMG/M
Scaffold IDGa0181348_1182794 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)763
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y

Sequences

Protein IDFamilyRBSSequence
Ga0181348_11827941F001725N/AMAAISTGTTCLYGIPNGTVTNLFVQSYSLSAAFNAEATVANEDGLTVTARYDDRRSELTVEGVAKTSTMPILGASLSFTVNTASAYPSGSASTSFVGTITKIDDKGSNKGFTSV
Ga0181348_11827942F001055N/ALATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSARPPGDLPEGEGNYACSVRITLFSNADDTTLADHRLRCAALVGNMRDLVSIQAAFTATGDATCYDVTIMSEDEGIDERSWATSFSFDVLTVFPA
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