NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181355_1006392

Scaffold Ga0181355_1006392


Overview

Basic Information
Taxon OID3300017785 Open in IMG/M
Scaffold IDGa0181355_1006392 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5204
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024095Metagenome / Metatranscriptome207Y
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0181355_100639210F024095N/AGAAVGATASATLIMQADSRFELMGVMGTGSATETVGGVVFSDVNAQAPSTFTCTIRDQTTGRDLMSAPVPQRVLCGNAFRQFLEKRGIVFEPQSNLLFTFTNTTALANNITLALHGYKMI
Ga0181355_10063922F063343N/AMNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFVQATFSWVRNPASWVRVFNWTGVSAGINGLGGVGGGTLISRRHVLFANHVPYPARPIDIFFVNKDSRTFNYKVTNVQQVGSTDIAIGTLDKDADPSLIVYRVLPDNWLQYIANKPVPLTATYIAAGITTPIQTFVLPVLYTGQDRKVSTGDVININLAGNASVSIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTGADGDATVGTFPWLLYQKSAIEKIMGMKLQVADMSGLTRIA
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