Scaffold Ga0181355

Basic Information
Taxon OID	3300017785 Open in IMG/M
Scaffold ID	Ga0181355_1007273 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017785 Open in IMG/M

Scaffold ID

Ga0181355_1007273 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4887
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4887

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F010616	Metagenome / Metatranscriptome	301	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10072731	F010616	N/A	KRILPPRSKDLPDEGSQVHFFGATNMPHPSDPQSDKKVQINFRKYDNGVITFQVMGPLEQVAIGERINKFGQKQPEKYSWIDPRTEEMVLRRADGTYTEKGRGMYAYCIGEKGGGIWALIDRDMLNIVQKNVTNPWV
Ga0181355_10072735	F004695	AGG	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQANQATEMVKYMINSKNDSYACIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVNLEGVMQEMMTPDDEPGTMQEEVNDAILANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFLGFYDPMTIHECKAQFPYVDVEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDATKHIYEFGAMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFGQAMMALDPSVPELFSKIRRPYEDTLRVLGVKDVDAYLPTLEEAAKIIQAQAAKGPSAEQQETQSKTDLNKAKTDETIANTLFTQKKAEDIDTDNMFEALAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181355_1007273

Overview

Ecosystem & Geography

Associated Families

Sequences