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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017786 Open in IMG/M |
| Scaffold ID | Ga0181424_10002883 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7609 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040106 | Metagenome / Metatranscriptome | 162 | N |
| F042905 | Metagenome / Metatranscriptome | 157 | N |
| F042906 | Metagenome / Metatranscriptome | 157 | Y |
| F094928 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181424_100028833 | F094928 | GAGG | MVMRRSDVNSWVQSYGGGQLRTFDRTVGIYVNAYVRGTGVTSYSRGQWYYHRFEYVNASNGVYNNYVDGGINAGNIIYPIDIVDTLEDLTRRTVDLIEGRMSNRTINAYYCHASCHSSCHSSRGRR |
| Ga0181424_100028834 | F040106 | GAGG | MSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQQIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFKENTPKQMDWSWTLQASNVVGKSIDKETYNRIIKRSVQDYETIVEMNPAFSRANNELVQRKNLFGWNEFLGRVIDEGNANETVMSMAHLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEEILDRKNQLIAKGINRSSKVKDCSTCQYKVACASRLVFEAQETLKIDGCVLNKDVLKHYNPYDWTWNDDATKKLGEAS |
| Ga0181424_100028837 | F042905 | AGAAG | MIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNADHLTTLYNTLLKGSYYPDEIVVGPTDIFDAENFDEIMEHSSMKDLYGISAIGFLTTLNQPIEVIKQKLDKIWSLYEGIDRIPDIDFKIVLDINQYINKDIRMADWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLLNQNIDSKWRNLYTFFDSSFNGYGCQNYSFYNGKMYVNPFLYDAIIQRTPEFESRIDEPKLYENLDYAKTTDECNGCEFLMSCAERNVHMYMKSRKIKSCVALKEYMHADN |
| Ga0181424_100028838 | F042906 | AGGA | MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASEVHQLDSAKQFIKEITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCQFLKDNINLDTEIEIGIATNPHKFMSLDYMSNIQSKLKYLDENIDHEITYTFVVNIKDYGLDYHELHEHAVKCFDTILDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVETFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVDRCIAPKENMINNIHNYNTPAQEMYDWEGYSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |