NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181424_10045649

Scaffold Ga0181424_10045649


Overview

Basic Information
Taxon OID3300017786 Open in IMG/M
Scaffold IDGa0181424_10045649 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1899
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022391Metagenome214N
F054042Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0181424_100456494F054042GAGGMIEQTPFIQIVFEEIEEYGLCDHRLKLFNLMEAALNGMCGKARKEIDELWLEIQDYKEQLAIPPDESELALHHPTMSV
Ga0181424_100456496F022391GGGGGMTQGDYVKVSSTTEVDAKLKHLETRIRGWNYQSPLAIKLMPFTDPTSLSQEALFNIWCREIADQMKKKAPDADAEAWKLWLKHKFLGTYAVKVGRESIDGQVYATPKGKAKMAQFMHSVLVYADDKLRVRLSVPRNSEYVKVRENEQAKESKQKAKKEANHTAGSGKGSSATAKARSSKGEQQIGLL
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