NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183260_10055659

Scaffold Ga0183260_10055659


Overview

Basic Information
Taxon OID3300017787 Open in IMG/M
Scaffold IDGa0183260_10055659 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2930
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0827Long. (o)164.1679Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F006339Metagenome375Y
F007281Metagenome / Metatranscriptome354Y
F020164Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0183260_100556595F006339GGAGGMQNDQTRQDAKRLLAAMSTNHSEARMVSPYGLDRPFSPSWADAEQAGLDRVRRDAAIWWLIDNNLLKREEEAENLRDKGKGLPDYDYVYGSVFRITGHGRELLEEIWEE
Ga0183260_100556596F001245AGGMSDKALGMLKHMREQIVRRAERYVAVREAAISIGVDPGGSECDGLVEELLRGGYLQRYPSPSLTAHGLYRLTDLGIAAADEADSPTPLR
Ga0183260_100556598F007281GGAGGMAGEQYYALCVEEEDGSTEIAFFELGREALPGALGISLYTSPDGELQRRHLQGNDHVVIVSKSPRDLLEAMSTGVPSSVFVDGGRIAGSVFKAMLKEDLGIPLRQPKIVRLDEPDLH
Ga0183260_100556599F020164GGAGGLAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEPINEDAEEESARSAFVPWAALRYVQLLEEPSEPQRARPKGTAAEKPEDPAP
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