NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183260_10738839

Scaffold Ga0183260_10738839


Overview

Basic Information
Taxon OID3300017787 Open in IMG/M
Scaffold IDGa0183260_10738839 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0827Long. (o)164.1679Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018492Metagenome / Metatranscriptome234Y
F063249Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0183260_107388391F018492AGGMADGWRKIEHGLFESPDGQWRIANPWKLKTELRHRWLVAERQASGSGWNMHDGDHATLHDARAYVKARDPAS
Ga0183260_107388392F063249GAGMSNDPTPRLSGDEVLALRFAAHRQLTRWSNKPKLSAHQHGQHTALKSAVRVLHDHALAHGCELRAPGAQGDGDG

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