NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10012507

Scaffold Ga0169931_10012507


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10012507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11754
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100125075F000258GGAGGVTANYKLDAMLELRKYLWKELYTRDIFDEDDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMFTLYSTSIADINEIRNYMTDEFRRMDESAKDINKWADLSDKFKFHSIWIADISPTAPSEELQGFFSAEVILEIKYSRITDNTGRFL
Ga0169931_100125076F001900GGAMLVQAASGLERMMYANQNGPLKDSTVAQISAYVYYEASVLSKLTTNAQFKALFTKIMFDQINSDFGNYIDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEEGLSFRINYDFLPSRSMVPALSGRRRHMFANKAAVMEAGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGNLVNTSIKNSGFQRIFNSSMSKALRVPSNIKKVQYSFSPNLIRSQADAALMASFGGAM
Ga0169931_100125077F001229GAGMNSIVDSVLSMNLDVYRQSEIQDTNTGAIVREWNFYKTVSCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0169931_100125079F001106AGGAGMSFETLKVSELKQIAEDFAVNTDGLKNKADVIAALAEEGVTWSVYNKTMDEMEEEDMSVEILPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMNNDAAQAIFDKEEGFRLATPREVQEYYN
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