Scaffold Ga0169931_10022532

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0169931_10022532

Scaffold Ga0169931_10022532

Overview

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10022532 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7924
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F057141	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1002253213	F057141	GGA	MRAEQSWSRIDPRPVMLYIPMSDDYVVYWNGIAMTHSMALCMAMEHLGIYATPEMKLALEKTYRRLYYSNAFDTRAWDSKVENGLIYPYLKRIMAEHLNKTVEGRDPKEILGWFIYDRARIKGQ
Ga0169931_1002253217	F014503	AGGA	MRTVVHHWRFEDGETVPKPDSPLLIDPPPRGWYCWVYPEDHDEFESWMAKNCPTADCTGRFNSGDPMITVYIKEDREATLFQLRWL

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