Scaffold Ga0169931_10118187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0169931_10118187

Scaffold Ga0169931_10118187

Overview

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10118187 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2478
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101181872	F013878	AGG	MLNLTELGVEVFIKKAQDITPYWDNYNLVIWKKDINGFTNVKGMFRENSWGTAEIISVDSNGIWKLPTKHVRHFK
Ga0169931_101181874	F000473	GAG	MFIDKSAAKQAEHFKHGINQWTGEPNKPVFYTPEMKRAIHNIKKPSMFIMDVVMYPDFLALRLYEDNFLQFEGNKKEMVIDYVTRVKKLIESYGVRCELEGKPSERVL
Ga0169931_101181875	F011938	GGAGG	VKEYYDTTHIVFIHSEQCHGTVEKLGAWASVVIYTKEGIEYNELMENEEFTIVDEIVFKHIEESN
Ga0169931_101181876	F000671	AGGAG	MEKILCYSCGKSKNKLDVKKSVLLPINLLVCETCISSRLEPRWVVILAGRSSGPDYVKEFIIKRRYIGNEITASELLI

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