NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10169514

Scaffold Ga0169931_10169514


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10169514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1922
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009071Metagenome / Metatranscriptome323Y
F027061Metagenome / Metatranscriptome196N
F038911Metagenome / Metatranscriptome165Y
F086835Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_101695145F086835GGAGMTDEIDISKVLIEGDTATIMGVKYKRVETPQSFYDKLWGLLKTKLGDSVECDEMADRVRDLIREHIPEPKIGPGLPEYSIGFNEALRQVKMRLFNGIQ
Ga0169931_101695146F009071AGGAGMPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEEECRQYAYDNYTDKQQTDMCLMDWEAREWNV
Ga0169931_101695148F038911GAGGMTVEKVKFVSVTRVIDDRKGIHYLDAIDENGMHWSAEMDNKQEQWLVYSKLWTRDPQQPFDL
Ga0169931_101695149F027061AGGAGGMTTRALQILESTMELSMRPKSGDRQKLIARVINEVADRLCTDCGELEDPVSVLREIADEVEAL
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