NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10190953

Scaffold Ga0169931_10190953


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10190953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F009398Metagenome / Metatranscriptome318N

Sequences

Protein IDFamilyRBSSequence
Ga0169931_101909532F009398N/AVTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTTFSRLQREDSGFVLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0169931_101909533F005024GGAGMRPAVFMEVDTSRFDAALKQYLLSTQRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGTPLGDINRKSKKTGKRIGRSRLLRRVHLIVQAKGARQGLRGLYGKRMKDAASDFMRKSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLVKPAGYKAPKKTNAALVALANQYGLPEENVAIHKGTVAHGVQAVPGWNPTAFVHMRTGIADNQYNRVAGIYIPAMQRALDDELTELTNHMTEAMLANGKVLEDNGFDIK
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