NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10404848

Scaffold Ga0169931_10404848


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10404848 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_104048481F007470N/AMDYQSGFEDGVTFTREVIIANIRLWAEKSEDGQVYDAIADRLEFGTVDYDL
Ga0169931_104048482F047650GGAMTSEDLDLVYYCDACSVARAAYLIKLLDGELAMCGHHYNKHKEALDKKAYDIIQLNKVEEEVPQLEKAER
Ga0169931_104048483F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGYNMLAQLAEAVFKARPRWNDPAYATRITISQMINNDWDSETGWGLHVNEIGDNEHKIAIVDFSQQTFSLHEVAEYDDPDNKVRGMSNEAIFTMDLSNFVEKYADVVVPV
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