NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136617_10012161

Scaffold Ga0136617_10012161


Overview

Basic Information
Taxon OID3300017789 Open in IMG/M
Scaffold IDGa0136617_10012161 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7668
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0586Long. (o)163.6839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003229Metagenome / Metatranscriptome499Y
F006197Metagenome379Y
F033335Metagenome177Y
F049417Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0136617_100121613F049417AGGAVREEEIMQIIPAPRGWYAYGQDEQGVEFLAPVACWALVESSSNVHRVVGLGAHGLGSVSRVEDLPGFVEYRYVPEEGGS
Ga0136617_100121615F033335GGAGGMNEGERDRLRRAVERLMIGQREALGVIDREVEDQESSAQETLAEVQDILSGAYEDARTILGGEEGGA
Ga0136617_100121616F006197GGAGMHLFVALEKPMRLVGGTGSSKELSLPPGYSLDHSDPDVLVLLCPHGTAAAHFSARGAAAEAIEQEARIHYRERNRSA
Ga0136617_100121617F003229AGGAGVQHHHQPATIAILGADTVVGRALCALLEGSGYQIRPLDTYPTGVVDDLLEGAHLLLLVPRLDEGVREAFLGAMGKSTPQRVGMPVIALSTPVEEDLPEKEGVISVPWPCETKVLVERIEAALIVPPASATSTTQARTG
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