NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136617_10031159

Scaffold Ga0136617_10031159


Overview

Basic Information
Taxon OID3300017789 Open in IMG/M
Scaffold IDGa0136617_10031159 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4757
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0586Long. (o)163.6839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006538Metagenome370Y
F012324Metagenome281Y
F041055Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0136617_100311595F041055AGGAGMDELSVTRPSPPSTRTIVADEDFCGQVAALLLCDRAPIHDAFIGEPVEEVLEMVRWALSHEDDEDFDTAEVLTAWAKKRGRGVWSGRPRPPKNEERRLDDELTWALATFWAEHPRELAELLERVQASVSANGRS
Ga0136617_100311598F006538AGGAGMSCELCGGGDMWIKTCLTPDGSRLLVCDECYGEQVSVLVIVPGDRVVMARCDHCWRYGNPREFVEISPGGRKNAYSGTCAQCEEEEGV
Ga0136617_100311599F012324AGGAGGVIGPEEPRLPPGYRLDRSDPDVWTLRRPEGWVVAHFSARGATKEAIEQTAWKDHEGAGEEEYP
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