NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136617_10104434

Scaffold Ga0136617_10104434


Overview

Basic Information
Taxon OID3300017789 Open in IMG/M
Scaffold IDGa0136617_10104434 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2451
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0586Long. (o)163.6839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005142Metagenome410Y
F057149Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0136617_101044343F005142GGAMTEILGNLAMTRPDVNGTPSLPKRNGPRGLLPSTWLERTLRVAYVDALGAGVETSGTLLDLYPAGPVLNIAGAKTLISWDRLVLCELVED
Ga0136617_101044345F057149AGGGGGMSTCAGIKRDGGRCTLSAQASSGMCWLHDPARADERHRHASRAARSKGNREVADLKEEIKTVIADVRGGDLLRSDAAVMIQGYRALKDFIALERQVKETDELAAEIEELKREYGAA
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Institute for Fundamental Biomedical Research
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