NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136617_10118204

Scaffold Ga0136617_10118204


Overview

Basic Information
Taxon OID3300017789 Open in IMG/M
Scaffold IDGa0136617_10118204 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2284
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0586Long. (o)163.6839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030494Metagenome185Y
F035366Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0136617_101182042F035366N/AMTITNKNDANKAAVLERLSAVRSALKNEPQSPPVARALEQCDRLELAINQFHAEGLRFAAFTLFRMVFGQGTGFTESVHISTQNLKSALDSAGYPH
Ga0136617_101182043F030494AGGMERIVPGGKGAARRRADLLGTPAFWLAIGVTLFALVPFALFPVMRAWLGAAILLMWACFFTANAMRSRRTHSIVSAPVYLLSAALLAGNAWGLVAVDVWMVWAVGAGILAANLTERFVGKYL
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