NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163161_10470779

Scaffold Ga0163161_10470779


Overview

Basic Information
Taxon OID3300017792 Open in IMG/M
Scaffold IDGa0163161_10470779 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017498Metagenome / Metatranscriptome240Y
F073315Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0163161_104707791F017498GGAGVLLTRPHVPFRLCLYLLENLMPINHVCEIAYDPAAPTGGIRLQANPPVCNRCWYEITPQNFGQASVVGYAHFSSRFEFIECTTCTTVRAGEPEQTLFWRQHQR
Ga0163161_104707792F073315N/AYDHTHIEENVREFLDYFVPRKVMAGNEFILKTCPRVMRQLLKWMKNKKLVDLTNDDIKEMCENQLWEDTRRDMGF

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