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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017815 Open in IMG/M |
| Scaffold ID | Ga0188954_10476 Open in IMG/M |
| Source Dataset Name | Saline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | GATC-Biotech AG, Konstanz, Germany |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3943 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | village of Ngallou, Senegal | |||||||
| Coordinates | Lat. (o) | 14.0491 | Long. (o) | -16.7624 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011228 | Metagenome / Metatranscriptome | 293 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0188954_104763 | F011228 | AGGAG | MDLSELKPASDTVEVTIKHPSTFEPLENDDGSEMTITVYAPHSKEYKAVVHEQTNRRLKKAQKNKGQIDITAEEVESGSIELLAKATKDWNITYGGEKPKLTVAKAKEIYNEVFWIREQIEEGVQDSLDFTKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |