Basic Information | |
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Taxon OID | 3300017815 Open in IMG/M |
Scaffold ID | Ga0188954_11944 Open in IMG/M |
Source Dataset Name | Saline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | GATC-Biotech AG, Konstanz, Germany |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1181 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses |
Source Dataset Sampling Location | ||||||||
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Location Name | village of Ngallou, Senegal | |||||||
Coordinates | Lat. (o) | 14.0491 | Long. (o) | -16.7624 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F075754 | Metagenome | 118 | N |
F086685 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0188954_119443 | F075754 | AGGAG | MTYQAGLGWHTPMNPWEPIHVRVDESSEWYEAQLERADFLRDTEEDAEMHHRKDGYVAEGIVKAVFPAMEWWDTNSFDGFLGGRRYDIISRSLNRGEPRQHYVHKIQLKKEERAKPSTHYYAVVRSHPDYWLIGHINSIRFWYLCDRSTPEFWDDEQFEGGYLSYEHFKQLDHQTPITPPPGIEVFGQG |
Ga0188954_119444 | F086685 | N/A | IELTSIPLVVWAIACATFVIIGHELTHYLAWLPVATSIEYHFQEQYIEAEYPDTTFARRWAAVAGISPIIVATGLVLALIAIGWNPTATWHHIIGSVAVVLYAISGGKSDYVALFNLVRTLRSPAAE |
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