NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10001309

Scaffold Ga0181565_10001309


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10001309 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19025
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004712Metagenome / Metatranscriptome427Y
F042922Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181565_100013092F004712AGGAMPINTITTSQAPDAKPVAVNKVVSTNWQVLIDVPQYEVPELVFGGSTTVEPGVGEVISPLVLCNTTANTVNVDVRTHRENDSNGNYINQEFYILRNLPLPAYETTAIPLNGQFLKTGDTLEIIADTDLAVHCTLSFTLGQSEEDDVV
Ga0181565_100013094F042922AGGMASRANIYIDKGMDFRTTLDLFDEDDQELVITTYNFYSGIKKLYSSSNTIADFTIEKANNDITLVLTDQQTDALVPGKYQYDVIMEKTTGERSKIVEGLAIVVDTITEVA
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