NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10003146

Scaffold Ga0181565_10003146


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10003146 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12642
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024090Metagenome / Metatranscriptome207Y
F080917Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1000314610F080917GAGGMGQLPEGRKALTDGDMVILLHNMARDAEKAKNEYLGSELRETADRFSELVKAASIAQHKAQQG
Ga0181565_100031462F024090GGAGMNLVGLYPKFTDDPYLRTPIERLQVETLPFKDFDKDGYEVPTPLEHLHYEANGVELNREIQYHVAPVQEWYTDVEQSEHGLVLDHCMLLTRYAFAGEARQQIVEVSKNRPILQKLLNIKPKWGIDFSLDFVTHDIVMEVIHIEQDFDNVDEAEQAKAKLEYLIESTDWFDGAMQLYKRKHEWQNLSSDDHSDYKAQFFGWHRAFDNKKVFST
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