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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017821 Open in IMG/M |
| Scaffold ID | Ga0187812_1000334 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17163 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F071164 | Metagenome | 122 | Y |
| F094469 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187812_10003343 | F038776 | GGAG | MSKNTIDYSALAQQLTKKAYKLADVKDQIESVAFDVVRFKDGDKAAQLWEVQSADDGDYIVALYEEGEEVAKTASEWSVVITKTAGVLQVSYKGDPLVRLPFTKLGIPRDQLGKVPQYLPEKLTSNKKLVKALLNELSAEAKHEVLKKYPELA |
| Ga0187812_10003346 | F071164 | GGAG | MRISEMLNAMAAWLESPTNEALLLAEEDEQCLKVVAESCVLAAALLKKAADEVDVLEPSEPSKITPESVQELANLATALDSSDDPQLKKQASVLDELLLTIAAPPGALAEKKAADDYRIEELRKKYEEPRKELHALDKTSDSLKAIDKSNMTKQYKILEAPLSTRTCPDHPGAQMSRVGEHVFQCELDKKTYNYESGYELQNGEKVPGGDVANQTQGLSTPFHAIFDDRQGRLGYNRA |
| Ga0187812_10003348 | F094469 | GGA | MNKNALKKVLEHPDRDEIIAKLVLDVSPKDINEWLVSKYTNVSETKFVIAEKSIKTFKDNYLDVYSLIQEDMAKTKQAVATSTENQLELAVRNNSTYRSKMLELAGKEIDVRQMVAQLCVAIETRVAQVFDEIQENPRDINTKVDRLLIDYAEVLGNILEKYYKFTESPSEISIQNNVTLQFMDQHILVLQEAVREVLSEMDLESSMLFIERIQIKMAKLKAPEKEVIPNTEIRLAEAKLLNETINKKLNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |