NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10000022

Scaffold Ga0187802_10000022


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10000022 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30873
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011437Metagenome / Metatranscriptome291Y
F031604Metagenome / Metatranscriptome182N
F034324Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_1000002215F034324GAGLQPESFAGQEKGEERIGNTVEPFDKPGGDFRYNLKGRGPFGRVARRS
Ga0187802_100000225F011437GGAGGMGKLVLGVATLALSAGAASAQAVYPGYGYEPYGYGYTATAPLYDYAGPADVAPAPHGYGPLVYAAPVYAPTPAYPAPPAAPGYYAARSVVVSQPLYDYAPGYWGR
Ga0187802_100000227F031604GGALLRFCFVEAPVSGAFVVVTQMLETTDFFQDQVKQCRKLAADAHDKNDREFWLRLAYRWEGLLRAQRPDGTGVEIVQKIRFERPIFTKRRRAA
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