NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10000162

Scaffold Ga0187802_10000162


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10000162 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15554
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013208Metagenome / Metatranscriptome273Y
F017215Metagenome / Metatranscriptome242Y
F035035Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_1000016211F035035AGGAGMKHFVLTCFATIALTACALSANRSEMVVQDTGLRTVVGCLSQTGETYVITGGAPGPKQFRIVSGDVSSLKGRIGHTVEVVGIVGKNDALANQNETYNEGTTTGVGYLTIDAQKIKQLYGNCSEPGKEWAGDHM
Ga0187802_1000016214F017215N/AMSEKRTKADKGQREADQLEKKSSHRPPQNQGKKAREDFSQAAVRIVEEATEKG
Ga0187802_1000016216F013208GGAMEGNIRERVEALRREIAEIQRLNLAYLQRPRPDFGAMDDHARREQRLREIMAELESMTDWKKP
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