NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10003327

Scaffold Ga0187802_10003327


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10003327 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4673
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_100033273F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVTETDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDSTSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVIAAVRREQQSARRRRPFSARSGYTPF
Ga0187802_100033274F000739N/AMNITRLEIWLKGLFAAGISGAAGGVLTGFAAVGIDPQHFNLQAGMGATLRIAAAAALINAVIGVAAYLQKSPLPEA
Ga0187802_100033276F006480N/AMPRVFIGGICLLLCGVISTRGKSDPPMFVFVRVDRDKGVAVLRPMIAPDIGVQVESGPHELKPGAVLHCEPLPREHDAVVDTQIAKVTDLALDCGEHKFVVKSLDFRPAGR
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Institute for Fundamental Biomedical Research
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