NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10021133

Scaffold Ga0187802_10021133


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10021133 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2240
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009161Metagenome / Metatranscriptome322Y
F012697Metagenome / Metatranscriptome278Y
F097849Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0187802_100211332F009161N/AMVVFSDSQLRAVWAVWAAADRVPFEKRGVFVERVVARLQLQRGFTDADLDDAVRAALTGLVQSAA
Ga0187802_100211333F097849N/AMRLVVRIIGGAVVLCCSFFITLWLTEPEAPPQRLEDQRISYYSDLPTASQNAGLRYSEQMKGGVDGFSRINEREVKVGGWVADPLGDSTPSKMFVFLNGSLVASGQTSGERPDLKRALI
Ga0187802_100211334F012697AGGAGMSDNHTAHDSLRRRLAAVACVAPIVQCIRKMRVEGLGDNEIAGLLRHAADELDEGSIRKNGKVNLAA
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