NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10291090

Scaffold Ga0187802_10291090


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10291090 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001829Metagenome / Metatranscriptome629Y
F018587Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_102910901F018587N/APRMRSLRAFLAASLRKFLKMEPHDGDFVSQRMCPSCGLITPRHEARCLECGKSFKPA
Ga0187802_102910902F001829AGGAGMRKQYLHLSAYPCDACEGPVIAGSTAVRENEISKETEVRRVGAICLSCGHRQDKATEPARPRHLLPIAWELVGAADACHPTAAFVEALNRVERH

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