Scaffold Ga0187818

Basic Information
Taxon OID	3300017823 Open in IMG/M
Scaffold ID	Ga0187818_10000005 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017823 Open in IMG/M

Scaffold ID

Ga0187818_10000005 Open in IMG/M

Source Dataset Name

Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54301
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (92.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

54301

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (92.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.9061

Long. (^o)

-76.1569

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F026941	Metagenome	196	Y
F052066	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187818_1000000521	F052066	AGGA	MDWAEQVRQILSTRGLTLYRVSQQTAQIFGHSSRFYVPHNLYYDVANPSLIPTIHQLLALSHITNYRLYDWLAVFGFDLDQMSRLRLLVPRQRTTLLDSAVYDTHAWIPWFAERPGAGPVPPIAPLGQLLASAKPRRAKELLTLNKRRFLYGTVGAGDVHAFPHLAPGSIVRVDERRPEELLARRKDMAERPFFLVEHGFGFTCSQLAVLEKDRIVLHSPQRLCAQLELRLGEEARIIGVVDAEIRPMTDHRGVQMQRRPGSLPKPRLLPVPSLATNLRDLLSSSRLRVGLSFREASGMSRWIADTLSDELYFAAPSTLSDYETLSGPPRHVQKIITLCVLYCIDFEEFLRACGLPLEQIGRDPIPDELVPRQAPNQSPGLPILDGQESIQEHGGFLDSLLKQWEEVPLFLRHSLNELTGLKAFSHSDIYWVGGDKAPIHPCLINATFVAVNRRVKKPAQSTANADCEQPIYLILKRDGSYLCGRCALQQGSLVVHVYPGGPSGTQQFRNGIDAEIVGQVTAILRRLP
Ga0187818_1000000536	F000528	GGA	MGEWKAPLSLRVRQALRAELEEFAARERRTLGNIGELILEWGFEQLKAAGSTERLLKFKIRAPQIPSRRQELPK
Ga0187818_1000000537	F026941	AGGA	VKADAYAEMHLWNLNLDRLIRVLQRLETFSICPKQEMKAYEVRLEEIRAGFNADFAEAMASKERADESRFQTQRVAWEMKHSDDGQTSPNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187818_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences