Scaffold Ga0187818_10000216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187818_10000216

Scaffold Ga0187818_10000216

Overview

Basic Information
Taxon OID	3300017823 Open in IMG/M
Scaffold ID	Ga0187818_10000216 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18635
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019704	Metagenome	228	Y
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187818_1000021612	F093562	AGGAG	MSERSRLLAEAGKQISNPFLLCALVSQRTRQLMMGGNADTNTAQMVDSALNEVIAGALEFELGKPRRLFLIPVEAQNEEGDDALESTEVPKISAATRQVEAP
Ga0187818_1000021613	F019704	GAG	MNRRIKVRELRQREGLRGEVVELFHSRNTGLIHGDDGYLVTFNRESLVVGLSYRELSLGLKVTYGMFFAIGTKIPTAINVRPASGGQTKPAERDKRADSARAGGPGIV

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