NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10000253

Scaffold Ga0187818_10000253


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10000253 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17779
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000309Metagenome / Metatranscriptome1327Y
F000828Metagenome / Metatranscriptome872Y
F010187Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_1000025317F010187AGGAGGMHPEDLMKPDLFSEIVLLGSGGLIFVSLLLIVVTALTRA
Ga0187818_1000025319F000309GGAGMKLDENQSLERVLESAVVASWADLVRGAQTGLIHIEYGFAPGGTLDYLKLWSSITPGHWLLACEYWMTTSTFHNRGVCFDNGYQSEGLAHILESVMQHQDKFSLPTDFGRQGLLQIPTPTEEESTAAAASVSEAFDRLGSVLAQPALA
Ga0187818_1000025320F000828N/AMRIADIKLASNHQMEETEKSIFDQQYRVVAVESDRLLLRGILSGEVLTIINPEPETPLTQEDFPPGKLIALSDPSTAPLN
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