NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10000689

Scaffold Ga0187818_10000689


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10000689 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12619
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F029187Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100006891F029187AGGMFFWGTSLAATRALEKGKGCDIGYALAINSCEEANSVEACAVTALDAITTFAVPNPNYSSQSRRFFQVWLPVGLPFRADHSAYFGLAKV
Ga0187818_100006892F001010AGGAMQNTGDPRARGEIVAVIEHVLSDRAGEWRVSIVGSHANDNWELTVEGPEGFERSYTLVGGAGEHEPAAIGNLVVKLLPARKP
Ga0187818_100006893F002004GGAMRKIPNSSRRLDQHISRALNQIKKPSTAEEITELLNRDLEPEDRPFQTKEVAEWLRNTGDTALTLYWSRTRPRR
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