 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017823 Open in IMG/M |
| Scaffold ID | Ga0187818_10004072 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6203 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002291 | Metagenome / Metatranscriptome | 574 | Y |
| F026700 | Metagenome / Metatranscriptome | 197 | Y |
| F052077 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187818_100040722 | F026700 | GGCGG | MPWPSPSSAISVKYCPLCDAEYAASHTHCTVCGVDLVAEELRGRPLDERQRNERIVVVWRGGDPLAVSEVITTLREAGVRHHVQPTNDHMVFELGMPRPKYAVRVFASDAAKAKELLADVRESPPFALTETHELEQEQTSVPASAPKHEWNPAAATVEIWSSEDAALADLLEACLHENKIGVRREGTEPAPRRFLVMPADEVQAREIIREVRDATPPA |
| Ga0187818_100040724 | F052077 | AGGAGG | VREDVHARAEELIAKERVEGISTAEQEWLGQHLRECARCVGAANATEQALRSLRTLSVPLPRELASRTQFRLRLRAQELQVREPRWRLVWMMCGASWVAGAATAPYVWRGLEWIGHRLGVPDLVWQMGFGVWWALPAIVAGAILLVENAGQSVRRNLDDAA |
| Ga0187818_100040726 | F002291 | GGAGG | MSANPSLGASLILLWAGEDPAIHAALLETLNAAGIPCKDMTLGDDEVAPTADPLPIDWKPRFGFEVAVLSSDLTAAQQILETLLAEEPQDLEIPEQPAATVEEPPLTVTTELHPTVEVWAGSDDKIAQFLTAAMQENDIPIHLENPADQTRIYVSAANEARAREIVREVTEGAPPK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |