NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10081831

Scaffold Ga0181552_10081831


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10081831 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026286Metagenome / Metatranscriptome198Y
F072125Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0181552_100818312F026286AGGMRSSEFITERRGTSLKQGKIPHHVEKASPGSLKNNGYYDLYRASLAMASMDADGNAEHEMDNASWLAGDGYVGTYTDEEEKLAQNAFKSIGLTAKKRTAQKGSSELPAVNTKSPVVAFKGYPR
Ga0181552_100818313F072125AGGAMAITVYSGAIANTVWTTDKASISTGTNSVTAQVRLSGKPTANASAFLYNDGDQANSVPIVISANSKRDIWVGVGNQLTIVGGNGTAAEIGAASSGNAGVMD
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