NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10109238

Scaffold Ga0181552_10109238


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10109238 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1522
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024137Metagenome / Metatranscriptome207Y
F061906Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181552_101092382F024137AGGAMNTNKLTTKLSTKVIMNVAGLMCKVWKYGRSKYNNMSDFDYHIKDLRSQYPNELVYKNAVGNLPFYDKINEIDDEYEKTSSIKIGDCHLRYTFDKSVRNYKVENDAEAYIHTENPREPMIRNLITQTQIRHNEPKSLKVFNSERKGERNGNVVNLHSK
Ga0181552_101092384F061906GAGGMQILVLDTFDNWGHMVSKVDKGVLATALKDAETNLTPEQPAEVIVYQTPEDFLE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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