Basic Information | |
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Taxon OID | 3300017832 Open in IMG/M |
Scaffold ID | Ga0181858_1012036 Open in IMG/M |
Source Dataset Name | Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_SG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2940 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca |
Source Dataset Sampling Location | ||||||||
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Location Name | Newby Island compost facility, Milpitas, CA | |||||||
Coordinates | Lat. (o) | 37.454581 | Long. (o) | -121.928712 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F098955 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181858_10120363 | F098955 | GGAG | MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED |
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