NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187820_1010282

Scaffold Ga0187820_1010282


Overview

Basic Information
Taxon OID3300017924 Open in IMG/M
Scaffold IDGa0187820_1010282 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2239
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006278Metagenome / Metatranscriptome377Y
F015384Metagenome / Metatranscriptome255Y
F029198Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0187820_10102821F029198AGGAGMETESYSRAVRVEGEVIVLHCWACGTAHCLNLELCAPEELAHMVCSNSNCQMSMFLVNELAVDNEINKPTTKSALAAPFAALSRLWR
Ga0187820_10102824F006278GAGGMFRAEIRWLENGPTLKMEGKLAGDWAEQARDLVTKDLVPKGLVVDLTEVSYVDAAGEQLLKWLASVGAVFVAGTVYAFAVCDRLRLPPVKSITKRRHGSGSEKSSMKYSHPVEAI
Ga0187820_10102825F015384AGGAGMSWFHASTAPVDARNHASPAEIVACFQDQRHLLGKLAFLITGDQATAEQAIVAACEVTLRGN
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Institute for Fundamental Biomedical Research
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