NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187820_1028268

Scaffold Ga0187820_1028268


Overview

Basic Information
Taxon OID3300017924 Open in IMG/M
Scaffold IDGa0187820_1028268 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1443
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004961Metagenome / Metatranscriptome417Y
F076737Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0187820_10282681F076737GGAGMAANHIFGLGDLVPTTATVIAILAITVMPVYAQSQQPDTAKLKADAQNLFQIISSDKLKIQTFCEMADLGNQLDQADRVHDTKKALEVSQKMDELEGKLPEYTALVDGLMNVDPNSEDGQEVGSIILKLDELCD
Ga0187820_10282682F004961AGGAMSGQAEKFLAQWEIEHIEMVARSVREDQARCLALRCREDAAKAGISSQDLEAAAEGNLIGNMLQALDAAEFRQMYRDQLADQED
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