NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1001494

Scaffold Ga0187856_1001494


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1001494 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18656
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007120Metagenome357Y
F011572Metagenome / Metatranscriptome289Y
F016631Metagenome245Y
F022840Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100149411F016631GAGGMNRLANLALSVSETLVHEAGRLLFGVALGRAKELLGTPQRLGTRHLALNRALQKKAVDGALLAGPRTGKEYAKFILKKGLPTDQRPMSLAVENEPHSVDDFDGVIKEGYGKGEKRLIYSGTAVIKVGGSRQLGKINVHEHDTEKAGFHYDFVAERIDPHTQSFEVNIANGLFKGRYAFRQAFEKNRYPVARLKDESVLVAKPDIHLKPPEFLKTLRQSDRPVTVESKYDGSLANVAIHNLRAVYRSHRPEGESHYDKLPAIEDLHNRSPVRLARRFFPGPEQEGTYCGVSFTIPTEPPAWAES
Ga0187856_100149416F022840GGAGGMQEKTTTVNIDAQGNSTLDLEGFAGHGCEKAFDDFRGGDMVKVERKKPVYYTGHMIERAKSQH
Ga0187856_10014945F011572GGAGGMNTNRIFTSLFGGWLTAADKSAATAVTCTKSTVVPRISDLAQKATLATGGTLVEAGNKLIDCCTPK
Ga0187856_10014948F007120AGGAGGMKTLIITISVVCAVVAYYFGLRYFTGQDLGFTPARKYVRGLAENLLHTELTAAREAGTNSAATTEKSA
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