Scaffold Ga0187856

Basic Information
Taxon OID	3300017925 Open in IMG/M
Scaffold ID	Ga0187856_1002702 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12845
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12845

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F015502	Metagenome / Metatranscriptome	254	Y
F020070	Metagenome	226	Y
F061167	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_10027021	F015502	N/A	TFVVVNPVILSPANFNAIVHWLHHGGVRQSGYDFDGRLYMNFPSRLLAGVPWFYYLWLVLVKTPIPILMAVIVGSALLLRDRRTLASCFFLSLGVLQLVGLSVSGAKWIRYSLPLLPFLYLAGGYAVQQTLKAAKGKVPSQALVGLAAVILLGWPLLELQSWAPYYSFYLNSIGGEKQNITRYFAPDEVSEFDTREVAQKVCPFAPAAATVATARPMSMAYYLQACGRADLQIVPLYDTHYAPRDGDLIVLEPSRRFFETQRFFDALGNSKMPHSEIRVGPVLASTIYLFDPSVPGPKSGKEELTLTQLRGAPPRFDNDDQEPASTNTSRFGLSDLTRRLIQ
Ga0187856_100270212	F020070	GGTGG	MPASNTYARSASVALPSADGCRASSVVAFGCVLVVIGAYCFCPSVFAQISDSRTAEEPTKSWTATTDLKSDDLIPERIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFEPYQDVERETLTVDASTVRTTMRTFARDVNGVKALVQLTEEEKHILAGGDSNVIRVTSNPDVNGRIQPVQREIVETKSLGTDTQETNVTVMLPSVNGGLAPACKTHELRKRAANDTVETEKTTWLSDVNGKWQLSETRQNITTQEAKAHRIEERVFRPDAEGKLGQISRVVSQESESTSGEKRSVVETYSIDVPGTTQDGSLHLVERKTSTESSSSTGERANEQKVEQTNPGDPGSGLRVSVLVDGRMVPGPSGEQSTVTIRARDSNGNFGIVSVDTTKADRIPTIQVQQTPSEKP
Ga0187856_100270213	F001643	GGAG	MNLPTDTLIDMLYIILAGDFAITANDAAEIEQIQRELQRRGGEQRWSFQAVN
Ga0187856_10027027	F061167	GAGG	VVTTTKGTDALALMRRQSFDALVMDFTQETVDIINFTTKACGLQPSLAVFLADEWGDELATGLEELSHVLTMLEDDELARLKVESRTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187856_1002702

Overview

Ecosystem & Geography

Associated Families

Sequences