NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1003248

Scaffold Ga0187856_1003248


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1003248 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11446
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037313Metagenome / Metatranscriptome168Y
F042445Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100324810F042445N/AMTGRANARLVSESVKLLMMASKAIGAASIPLGLVMLAIAAAATTGCSQVNEKMFTLECAIGREPMAGELAPGTAMAIDVSTSPIPLISPPHRIVARCDSAGVVTMNIETPVDTGVSQLSTPLSTAASHVTYVP
Ga0187856_10032489F037313AGGAGMRFERFTRLILCACLLILAGCAQQGGGLLQPTPKQIISGKNTIVPSAAALSMEATNFCNAQAQVDYAGLVLYCDGKTPTLPLSISTTYQTETNQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGVAPPPVTAPSGAPAAARAS
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